Description Usage Arguments Value See Also Examples
This function wraps around
sbml_* functions but also performs some
basic sanity checks and adjustments which are:
Gives information about the used level and version and whether the FBC package is used.
Checks whether there are species that do not appear in reactions (warning).
Checks whether all species references in reactions are defined in the species list (error).
Maps lower and upper flux bounds to its respective global parameters.
A SBML file. This can be a file on the disk or the location to an online resource.
A list containing three elements:
The species (metabolites or molecules) in the model in a data frame. Boundary metabolites are removed automatically.
The global parameters defined for the model.
The reactions in the model as an "reactions" object.
sbml_reactions to read only parts of an SBML model.
1 2 3
# requires internet connection m_url <- "http://www.ebi.ac.uk/biomodels-main/download?mid=BIOMD0000000042" read_sbml(m_url)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.