Files in chandlerzuo/atSNP
Affinity test for identifying regulatory SNPs
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/atsnp-package.R
R/data.R
R/graphic.R
R/motif_analysis.R
R/utility.R
README.md
data/default_par.rda
data/encode_library.rda
data/example.rda
data/jaspar_library.rda
inst/.DS_Store
man/ComputeMotifScore.Rd
man/ComputePValues.Rd
man/GetIUPACSequence.Rd
man/LoadFastaData.Rd
man/LoadMotifLibrary.Rd
man/LoadSNPData.Rd
man/MatchSubsequence.Rd
man/atSNP-package.Rd
man/comp_indel_mat_d.Rd
man/dtMotifMatch.Rd
man/encode_motif.Rd
man/encode_motifinfo.Rd
man/jaspar_motif.Rd
man/jaspar_motifinfo.Rd
man/motif_library.Rd
man/motif_match.Rd
man/motif_scores.Rd
man/p_values_for_motif.Rd
man/plotMotifMatch.Rd
man/prior.Rd
man/pval_with_less_var.Rd
man/snpInfo.Rd
man/snp_tbl.Rd
man/transition.Rd
src/ImportanceSample.cpp
src/ImportanceSample.h
src/ImportanceSampleChange.cpp
src/ImportanceSampleIndel.cpp
src/ImportanceSampleIndel.h
src/MotifScore.cpp
src/MotifScore.h
src/PairedImportanceSampleClass.cpp
src/PairedImportanceSampleClass.h
src/helper.cpp
src/helper.h
src/struct.h
tests/indel_example.R
tests/test_change.R
tests/test_is.R
tests/testthat/helper_utils.R
tests/testthat/helper_utils_indel.R
tests/testthat/helper_utils_is.R
tests/testthat/test.R
tests/testthat/test_change.R
tests/testthat/test_indel.R
tests/testthat/test_is.R
vignettes/atsnp-vignette.rmd
vignettes/document.bib
vignettes/natbib.sty
