GetIUPACSequence: Get the IUPAC sequence of a motif.
In chandlerzuo/atSNP: Affinity test for identifying regulatory SNPs
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/motif_analysis.R
Description
Convert the posotion weight matrix of a motif to the IUPAC
sequence.
Usage
1
GetIUPACSequence(pwm, prob = 0.25)
Arguments
pwm
The position weight matrix, with the columns representing
A, C, G, T.
prob
The probability threshold. Default: 0.25.
Value
A character string.
Author(s)
Sunyoung Shin sunyoung.shin@utdallas.edu, Chandler Zuo
chandler.c.zuo@gmail.com
Examples
1
2
data(example)
GetIUPACSequence(motif_library[[1]], prob = 0.2)
chandlerzuo/atSNP documentation built on Oct. 31, 2020, 4:33 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/motif_analysis.R
Description
Convert the posotion weight matrix of a motif to the IUPAC sequence.
Usage
1 | GetIUPACSequence(pwm, prob = 0.25)
|
Arguments
pwm |
The position weight matrix, with the columns representing A, C, G, T. |
prob |
The probability threshold. Default: 0.25. |
Value
A character string.
Author(s)
Sunyoung Shin sunyoung.shin@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com
Examples
1 2 | data(example)
GetIUPACSequence(motif_library[[1]], prob = 0.2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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