comp_indel_mat_d: Compute the D matrix for indel calculation.
In chandlerzuo/atSNP: Affinity test for identifying regulatory SNPs
Description
Usage
Arguments
Value
Description
Compute the D matrix for indel calculation.
Usage
1
comp_indel_mat_d(pwm, stat_dist, insertion_len)
Arguments
pwm
The Position Weight Matrix with dimension motif length x 4.
stat_dist
A vector for the stationary distribution for the Markov Chain.
insertion_len
An integer for the insertion length.
Value
A matrix of the same dimension as PWM.
chandlerzuo/atSNP documentation built on Oct. 31, 2020, 4:33 a.m.
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Description Usage Arguments Value
Description
Compute the D matrix for indel calculation.
Usage
1 | comp_indel_mat_d(pwm, stat_dist, insertion_len)
|
Arguments
pwm |
The Position Weight Matrix with dimension motif length x 4. |
stat_dist |
A vector for the stationary distribution for the Markov Chain. |
insertion_len |
An integer for the insertion length. |
Value
A matrix of the same dimension as PWM.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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