pval_with_less_var: Select p-value estimates with less variance.
In chandlerzuo/atSNP: Affinity test for identifying regulatory SNPs
Description
Usage
Arguments
Value
Description
Importance sampling based p-values can be computed in two forms
A) sum_i weight_i*X_i / N; B) sum_i weight_i*X_i / sum_i weight_i.
This util function picks the better form.
Usage
1
pval_with_less_var(pval_mat)
Arguments
pval_mat
A matrix with 4 columns.
Column 1 uses form A
Column 2 is the estimated variance of Column 1
Column 3 uses form B
Column 4 is the estimated variance of Column 3.
Value
A matrix of 2 columns. Column 1 is the p-value estimate. Column 2 is the estimated variance.
chandlerzuo/atSNP documentation built on Oct. 31, 2020, 4:33 a.m.
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Description Usage Arguments Value
Description
Importance sampling based p-values can be computed in two forms A) sum_i weight_i*X_i / N; B) sum_i weight_i*X_i / sum_i weight_i. This util function picks the better form.
Usage
1 | pval_with_less_var(pval_mat)
|
Arguments
pval_mat |
A matrix with 4 columns. Column 1 uses form A Column 2 is the estimated variance of Column 1 Column 3 uses form B Column 4 is the estimated variance of Column 3. |
Value
A matrix of 2 columns. Column 1 is the p-value estimate. Column 2 is the estimated variance.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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