README.md

In charliex210/sctools: Tools for single cell RNAseq analysis

What is sctools?

sctools is a R package for single cell RNA-seq data analysis of dynamic biological process. sctools help users to preprocess their raw RNA-seq data, and further look insight the gene expression pattern. Some state-of-art methods are available, including dimensionality reduction, regression analysis and clustering.

How to install sctools?

Some packages need to be installed before sctools,

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("org.Mm.eg.db","org.Hs.eg.db","topGO","lfa"))

To install development version from GitHub, use the devtools package,

install.packages("devtools")
library(devtools)
install_github('charliex210/sctools')

Contributing

We welcome any bug reports, enhancement requests, and other contributions. To submit a bug report or enhancement request, please put it in issues. For more substantial contributions, please fork this repo, push your changes to your fork, and submit a pull request with a good commit message. For more general discussions or troubleshooting, please email [e-mail].

charliex210/sctools documentation built on Dec. 29, 2021, 11:19 p.m.