snn_cliq: SNN-Cliq clustering.
In charliex210/sctools: Tools for single cell RNAseq analysis
Description
Usage
Arguments
Value
Description
Clustering cells using SNN-Cliq algorithm.
Usage
1
snn_cliq(dmat, knn = 3, merge_cutoff = 0.5, r_cutoff = 0.7)
Arguments
dmat
Paire-wised distance of cells.
knn
Number of nearest neighbors to calculate shared nearest neighbors as secondary distance.
merge_cutoff
merge_cutoff threshold.
r_cutoff
r_cutoff threshold.
Value
Clucstering labels
charliex210/sctools documentation built on Dec. 29, 2021, 11:19 p.m.
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Description Usage Arguments Value
Description
Clustering cells using SNN-Cliq algorithm.
Usage
1 | snn_cliq(dmat, knn = 3, merge_cutoff = 0.5, r_cutoff = 0.7)
|
Arguments
dmat |
Paire-wised distance of cells. |
knn |
Number of nearest neighbors to calculate shared nearest neighbors as secondary distance. |
merge_cutoff |
merge_cutoff threshold. |
r_cutoff |
r_cutoff threshold. |
Value
Clucstering labels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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