Description Usage Arguments Value
Calculate statistical significance of variables driving latent variation using jackstraw
1 2 |
mat |
Gene expression matrix, columns are cells and rows are genes. |
r |
A number (a positive integer) of significant principal components. |
s |
A number (a positive integer) of “synthetic” null variables. Out of m variables, s variables are independently permuted. |
B |
A number (a positive integer) of resampling iterations. There will be a total of s*B null statistics. |
adj.method |
Correction method for p-values, see |
log |
Comppute PCA of logarithm. |
scale |
Scale the gene expression. |
verbose |
A logical specifying to print the computational progress. |
... |
Additional arguments passed on to |
Statistical results of jackstraw.
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