violinPlot: Violin plot.

In charliex210/sctools: Tools for single cell RNAseq analysis

Description

Violin plot for specific gene in expression matrix.

Usage

violinPlot(mat, gene, level = NULL, levels = NULL, color = NULL,
  log = TRUE, jitter = FALSE)

Arguments

mat	Expression matrix.
gene	Gene id in rownames of mat.
level	Level in colnames of mat.
levels	Factor, custom level define by user.
color	Vector of rgb color indices for violin.
log	Boolen value, log transform the expression or not.
jitter	Boolen value, plot dots or not.

Value

ggplot2 object

charliex210/sctools documentation built on Dec. 29, 2021, 11:19 p.m.