Description Usage Arguments Value
Runs affinity propagation clustering.
1 2 3 |
mat |
Gene expression matrix, columns are cells and rows are genes. |
k |
Desired number of gene clusters. |
metric |
Metric used to compute the paired distance - default is pearson correlation distance. |
negDist |
The dissimilarity matrix given by user. |
cell_labels |
cell clustering labels, it must be given when check_outlier_pattern = TRUE. |
check_outlier_pattern |
Detect and remove negtive expression pattern dominated by rare cells. |
check_min_size |
Check the correlation of the cell cluster smaller than check_min_size with all gene clusters. |
check_cor_thr |
Correlation threshold to remove outlier pattern. |
... |
Additional arguments passed on to apclusterK. |
Gene clustering results.
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