Man pages for charliex210/sctools
Tools for single cell RNAseq analysis
| alter_label | Re-ordering clusters. |
| apclusK | Clustering genes to k clusters using affinity propagation... |
| aspecc | Spectral clustering. |
| cheatmap | Heatmap for gene expression pattern. |
| de | Differential expreesed analysis of two conditions. |
| FetchGO | Fetch genes in GO term. |
| find_order | Find clustering order using TSP algorithm. |
| glm.enet | Variable selction based on elasticnet penalty. |
| go_enrich | Gene ontology enrichment analysis of gene clusters. |
| iforest | Detect outliers. |
| p.cor | Calculate the p-value of correlation coefficient. |
| re_order | Re-write clustering labels. |
| sig.pcs | Discover significant latent variation in data. |
| sig.var | Discover high discriminant genes in unsupervised manner |
| snn_cliq | SNN-Cliq clustering. |
| violinPlot | Violin plot. |
