Man pages for chedonat/DigitalPicoTools
DIGITAL ANALYSIS OF PICOGRAM QUANTITIES OF DNA
| ComputePhasingCode | Compute the Phaisng Code |
| DigitalPicoTools | DigitalPicoTools : A set of tools for Digital analysis of... |
| getBreadthGenomeCoverage | Compute the percentage of the genome covered by the LFR set. |
| getBreadthGenomeCoverage-methods | Retrieves the fraction of the whole genomes covered by the... |
| getLFRset | Computing Long fragment Reads from the wells |
| getLFRStats | A function returning the following statistics from an LFR... |
| getLFRStats-methods | A function returning the following statistics from an LFR... |
| getLFRStatsPerWell | A function returning the following statistics per wells from... |
| getLFRStatsPerWell-methods | A function returning the following statistics per wells from... |
| getMutationsOfLFR | Retrieve the mutations on an LFR |
| getN50 | Compute the N50 of an LFR set. |
| getN50-methods | Compute the N50 value of an LFRset |
| getVariantAlleleInfo | Retrieveing variants genomic and alleles count information |
| getVariantCoverageTable | Retrieveing variants genomic and alleles count information... |
| getWellLFRset-methods | Retrieves all the LFRs oiginating from a given well |
| getWells-methods | Retrieving wells and fragments distribution |
| hist.LFRset | Plotting histograms on an LFR data set |
| initsWellSamples | Initialising a set of Well samples |
| LFRdataframe-class | The LFRdataframe class |
| LFRset | The LFRset class |
| plotLFRDistribution | A method for plotting the LFR distribution |
| plotLFRDistribution-methods | Plot the LFR distribution |
| plot.LFRset | Plotting an LFR data set |
| plot.VariantAlleleInfo | Plotting the variant allele information |
| SampleCoverage | The SampleCoverage class |
| summary.LFRset | Summary statistics on an LFRset Object |
| VariantAlleleInfo | The VariantAlleleInfo class |
| WellSample | The WellSample class |
