LFRset: The LFRset class

In chedonat/DigitalPicoTools: DIGITAL ANALYSIS OF PICOGRAM QUANTITIES OF DNA

Description

An S4 class containing the set of Long Fragments Reads (LFR) retrieved from an LFRSeq experiment.

Slots

Table

A data frame serving as a containers of the LFRs. Each LFR is represented by the following fields :

LFRName

The name of the LFR. By default it is a combination of the well's name the LFR is originating from and the genomic location of the LFR (Chromosome, atart position and end position)

Chrom

The chromosome of the LFR

Start

The starting position of the LFR

End

The ending position of the LFR

Length

The length of the LFR

AvgCoverage

The average Coverage of the LFR

NbReads

The number of reads making up the LFR

Well_ID

The name or ID of the well the LFR is originating from

Well_Number

The number of the well

Note

This class is one of the main class of the package

See Also

getLFRset, getWells, getLFRStats, plotLFRDistribution, plot.LFRset

chedonat/DigitalPicoTools documentation built on May 13, 2019, 3:39 p.m.