getLFRStatsPerWell-methods: A function returning the following statistics per wells from...
In chedonat/DigitalPicoTools: DIGITAL ANALYSIS OF PICOGRAM QUANTITIES OF DNA
Description
Usage
Arguments
Value
See Also
Examples
Description
- N
The number of Long Fragments reads in the set
- N50_value
The N50 of the LFR set
- N50_totallength
The Sum of LFR lengths greater or equal to the N50
- L50
The L50 of the set of LFR
- L50_percent
Percentage of LFR having a length greater or equal to the N50
- Max
Maximum LFR length in the set
- Min
Minimum LFR length in the set
- Mean
TThe mean of the LFR lengths
- Median
The median of the LFR length
Usage
1
getLFRStatsPerWell(object)
Arguments
x
an object of class LFRset
Value
A data frame containing for each well having an LFR in the LFR set the following statistics :N, N50_value,N50_totallength,L50_value,L50_percent,Max,Min,Mean,Median .
See Also
getN50, getLFRStats, getBreadthGenomeCoverage, plotLFRDistribution, summary.LFRset, getLFRset, plot.LFRset
Examples
1
2
3
data(FiveWellsLFRset)
P009_LFR=getWellLFRset(FiveWellsLFRset,'P009')
print(getLFRStatsPerWell(FiveWellsLFRset))
chedonat/DigitalPicoTools documentation built on May 13, 2019, 3:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
- N
The number of Long Fragments reads in the set
- N50_value
The N50 of the LFR set
- N50_totallength
The Sum of LFR lengths greater or equal to the N50
- L50
The L50 of the set of LFR
- L50_percent
Percentage of LFR having a length greater or equal to the N50
- Max
Maximum LFR length in the set
- Min
Minimum LFR length in the set
- Mean
TThe mean of the LFR lengths
- Median
The median of the LFR length
Usage
1 | getLFRStatsPerWell(object)
|
Arguments
x |
an object of class |
Value
A data frame containing for each well having an LFR in the LFR set the following statistics :N, N50_value,N50_totallength,L50_value,L50_percent,Max,Min,Mean,Median .
See Also
getN50, getLFRStats, getBreadthGenomeCoverage, plotLFRDistribution, summary.LFRset, getLFRset, plot.LFRset
Examples
1 2 3 | data(FiveWellsLFRset)
P009_LFR=getWellLFRset(FiveWellsLFRset,'P009')
print(getLFRStatsPerWell(FiveWellsLFRset))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.