getLFRStats-methods: A function returning the following statistics from an LFR...
In chedonat/DigitalPicoTools: DIGITAL ANALYSIS OF PICOGRAM QUANTITIES OF DNA
Description
Usage
Arguments
Value
See Also
Examples
Description
- N
The number of Long Fragments reads in the set
- N50_value
The N50 of the LFR set
- N50_totallength
The Sum of LFR lengths greater or equal to the N50
- L50
The L50 of the set of LFR
- L50_percent
Percentage of LFR having a length greater or equal to the N50
- Max
Maximum LFR length in the set
- Min
Minimum LFR length in the set
- Mean
TThe mean of the LFR lengths
- Median
The median of the LFR length
Usage
1
getLFRStats(object)
Arguments
x
an object of class LFRset
Value
A list containing the following statistic on the LFR set :
N, N50_value, N50_totallength, L50_value, L50_percent, Max,Min, Mean, Median .
See Also
getN50, getLFRStatsPerWell, getBreadthGenomeCoverage, plotLFRDistribution
Examples
1
2
3
4
data(FiveWellsLFRset)
P009_LFR=getWellLFRset(FiveWellsLFRset,'P009')
print(getLFRStats(P009_LFR))
print(getLFRStats(FiveWellsLFRset))
chedonat/DigitalPicoTools documentation built on May 13, 2019, 3:39 p.m.
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Description Usage Arguments Value See Also Examples
Description
- N
The number of Long Fragments reads in the set
- N50_value
The N50 of the LFR set
- N50_totallength
The Sum of LFR lengths greater or equal to the N50
- L50
The L50 of the set of LFR
- L50_percent
Percentage of LFR having a length greater or equal to the N50
- Max
Maximum LFR length in the set
- Min
Minimum LFR length in the set
- Mean
TThe mean of the LFR lengths
- Median
The median of the LFR length
Usage
1 | getLFRStats(object)
|
Arguments
x |
an object of class |
Value
A list containing the following statistic on the LFR set : N, N50_value, N50_totallength, L50_value, L50_percent, Max,Min, Mean, Median .
See Also
getN50, getLFRStatsPerWell, getBreadthGenomeCoverage, plotLFRDistribution
Examples
1 2 3 4 | data(FiveWellsLFRset)
P009_LFR=getWellLFRset(FiveWellsLFRset,'P009')
print(getLFRStats(P009_LFR))
print(getLFRStats(FiveWellsLFRset))
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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