Files in chr1swallace/GUESSFM
Using GUESS for Fine Mapping
.Rbuildignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/AllMethods.R
R/GUESSFM-package.r
R/abf.R
R/add.R
R/combine-snpmatrix.R
R/ess-interact.R
R/groups.R
R/impute.R
R/input.R
R/model-union.R
R/plot.R
R/priors.R
R/qc.R
R/run.R
R/snp-picker.R
R/summary.R
R/tags.R
R/utilities.R
README.md
_pkgdown.yaml
docs/articles/groups.html
docs/articles/index.html
docs/articles/plotting.html
docs/articles/plotting_files/figure-html/unnamed-chunk-2-1.png
docs/articles/plotting_files/figure-html/unnamed-chunk-3-1.png
docs/articles/plotting_files/figure-html/unnamed-chunk-3-2.png
docs/articles/plotting_files/figure-html/unnamed-chunk-5-1.png
docs/articles/plotting_files/figure-html/unnamed-chunk-5-2.png
docs/articles/plotting_files/figure-html/unnamed-chunk-5-3.png
docs/articles/plotting_files/figure-html/unnamed-chunk-5-4.png
docs/articles/plotting_files/figure-html/unnamed-chunk-6-1.png
docs/articles/summx-tracks.jpg
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GUESSFM.html
docs/reference/abf.calc.html
docs/reference/abf.fit.parallel.setup.html
docs/reference/abf.speedglm.fit.html
docs/reference/abf2snpmod.html
docs/reference/accessors.html
docs/reference/addlines.html
docs/reference/best.models.html
docs/reference/best.snps.html
docs/reference/calc.maxmin.html
docs/reference/check.merge.html
docs/reference/cond.best.html
docs/reference/conversion.html
docs/reference/cummean.html
docs/reference/ess.read.html
docs/reference/ess2snpmod.html
docs/reference/expand.tags.html
docs/reference/ggbed.html
docs/reference/ggchr.html
docs/reference/ggld.html
docs/reference/ggsnp.html
docs/reference/group.multi.html
docs/reference/groups-class.html
docs/reference/groups-subset.html
docs/reference/groups.merge.html
docs/reference/guess.read.html
docs/reference/guess.summ.html
docs/reference/impute.missing.html
docs/reference/index.html
docs/reference/makestr.html
docs/reference/model.union.html
docs/reference/nmodes.html
docs/reference/overlap.html
docs/reference/pattern.plot.html
docs/reference/plot-methods.html
docs/reference/plot_diffuse.html
docs/reference/plotsummary.html
docs/reference/pp.nsnp.html
docs/reference/ppnsnp-class.html
docs/reference/qc.html
docs/reference/read.decode.html
docs/reference/read.ess.html
docs/reference/read.snpmod.html
docs/reference/run.bvs.html
docs/reference/scalepos.html
docs/reference/show-methods.html
docs/reference/show.ld.html
docs/reference/signal.plot.html
docs/reference/skewness.html
docs/reference/snp.picker.html
docs/reference/snpin.html
docs/reference/snpmatrix.combine.html
docs/reference/snpmod-class.html
docs/reference/snpmod.add.html
docs/reference/snppicker-class.html
docs/reference/snppicker-subset.html
docs/reference/snpprior-1.png
docs/reference/snpprior.html
docs/reference/snps.from.correlated.models.html
docs/reference/summ.setminmax.html
docs/reference/summary.html
docs/reference/tag.html
docs/reference/textvenn.html
docs/reference/union.html
docs/reference/xscale.html
docs/sitemap.xml
inst/Par_file_example.xml
inst/doc/groups.R
inst/doc/groups.Rmd
inst/doc/groups.html
inst/doc/introduction.R
inst/doc/introduction.Rmd
inst/doc/introduction.html
inst/doc/plotting.R
inst/doc/plotting.Rmd
inst/doc/plotting.html
inst/extdata/Par_file_example.xml
inst/extdata/X_55000
inst/extdata/Y_55000
inst/extdata/decode_55000
inst/extdata/decode_samples_55000
inst/extdata/init_55000
inst/extdata/log
inst/extdata/par.xml
inst/extdata/simdata.RData
inst/extdata/tags.RData
inst/tests/input-output.R
inst/tests/test_conversion.R
man/GUESSFM.Rd
man/abf.calc.Rd
man/abf.fit.parallel.setup.Rd
man/abf.speedglm.fit.Rd
man/abf2snpmod.Rd
man/accessors.Rd
man/addlines.Rd
man/best.models.Rd
man/best.snps.Rd
man/calc.maxmin.Rd
man/check.merge.Rd
man/cond.best.Rd
man/conversion.Rd
man/cummean.Rd
man/ess.read.Rd
man/ess2snpmod.Rd
man/expand.tags.Rd
man/ggbed.Rd
man/ggchr.Rd
man/ggld.Rd
man/ggsnp.Rd
man/group.multi.Rd
man/groups-class.Rd
man/groups-subset.Rd
man/groups.merge.Rd
man/guess.read.Rd
man/guess.summ.Rd
man/impute.missing.Rd
man/makestr.Rd
man/model.union.Rd
man/nmodes.Rd
man/overlap.Rd
man/pattern.plot.Rd
man/plot-methods.Rd
man/plot_diffuse.Rd
man/plotsummary.Rd
man/pp.nsnp.Rd
man/ppnsnp-class.Rd
man/qc.Rd
man/read.decode.Rd
man/read.ess.Rd
man/read.snpmod.Rd
man/run.bvs.Rd
man/scalepos.Rd
man/show-methods.Rd
man/show.ld.Rd
man/signal.plot.Rd
man/skewness.Rd
man/snp.picker.Rd
man/snpin.Rd
man/snpmatrix.combine.Rd
man/snpmod-class.Rd
man/snpmod.add.Rd
man/snppicker-class.Rd
man/snppicker-subset.Rd
man/snpprior.Rd
man/snps.from.correlated.models.Rd
man/summ.setminmax.Rd
man/summary.Rd
man/tag.Rd
man/textvenn.Rd
man/union.Rd
man/xscale.Rd
tests/testthat.R
tests/testthat/test-combine.R
tests/testthat/test-groups.R
tests/testthat/test-output.R
tests/testthat/tests.R
vignettes/groups.Rmd
vignettes/introduction.org
vignettes/plotting.Rmd
vignettes/plotting.org
vignettes/summx-tracks.jpg
