.Rbuildignore
.gitignore
DESCRIPTION
FAQ.md
NAMESPACE
NEWS.md
R/boundaries.R
R/check.R
R/claudia.R
R/coloc-package.R
R/plot.R
R/private.R
R/sensitivity.R
R/split.R
R/susie.R
R/testdata.R
R/zzz.R
README.md
_pkgdown.yaml
data/coloc_test_data.rda
docs/404.html
docs/FAQ.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/a00_data.html
docs/articles/a00_data_files/figure-html/unnamed-chunk-7-1.png
docs/articles/a01_intro.html
docs/articles/a02_data.html
docs/articles/a02_data_files/figure-html/unnamed-chunk-2-1.png
docs/articles/a02_data_files/figure-html/unnamed-chunk-7-1.png
docs/articles/a02_data_files/figure-html/unnamed-chunk-8-1.png
docs/articles/a02_proportionality.html
docs/articles/a02_proportionality_files/figure-html/unnamed-chunk-1-1.png
docs/articles/a02_proportionality_files/figure-html/unnamed-chunk-3-1.png
docs/articles/a03_enumeration.html
docs/articles/a03_enumeration_files/figure-html/unnamed-chunk-2-1.png
docs/articles/a04_sensitivity.html
docs/articles/a04_sensitivity_files/figure-html/sens-1.png
docs/articles/a04_sensitivity_files/figure-html/sens2-1.png
docs/articles/a04_sensitivity_files/figure-html/sens3-1.png
docs/articles/a05_conditioning.html
docs/articles/a05_conditioning_files/figure-html/sens-1.png
docs/articles/a05_conditioning_files/figure-html/sens-2.png
docs/articles/a05_conditioning_files/figure-html/sens0-1.png
docs/articles/a05_conditioning_files/figure-html/unnamed-chunk-5-1.png
docs/articles/a05_conditioning_files/figure-html/unnamed-chunk-5-2.png
docs/articles/a06_SuSiE.html
docs/articles/a06_SuSiE_files/figure-html/sens-1.png
docs/articles/a06_SuSiE_files/figure-html/sens-2.png
docs/articles/a06_SuSiE_files/figure-html/sens0-1.png
docs/articles/a06_SuSiE_files/figure-html/sens1-1.png
docs/articles/coloc.html
docs/articles/coloc_files/figure-html/unnamed-chunk-1-1.png
docs/articles/coloc_files/figure-html/unnamed-chunk-1-2.png
docs/articles/colocqq-tests.html
docs/articles/colocqq-tests_files/figure-html/unnamed-chunk-5-1.png
docs/articles/colocqq-tests_files/figure-html/unnamed-chunk-7-1.png
docs/articles/conditioning_05.html
docs/articles/conditioning_05_files/figure-html/sens-1.png
docs/articles/conditioning_05_files/figure-html/sens-2.png
docs/articles/conditioning_05_files/figure-html/sens0-1.png
docs/articles/conditioning_05_files/figure-html/unnamed-chunk-5-1.png
docs/articles/conditioning_05_files/figure-html/unnamed-chunk-5-2.png
docs/articles/enumeration_03.html
docs/articles/index.html
docs/articles/intro_01.html
docs/articles/proportionality_02.html
docs/articles/proportionality_02_files/figure-html/unnamed-chunk-1-1.png
docs/articles/proportionality_02_files/figure-html/unnamed-chunk-3-1.png
docs/articles/sensitivity_04.html
docs/articles/sensitivity_04_files/figure-html/sens-1.png
docs/articles/sensitivity_04_files/figure-html/sens2-1.png
docs/articles/sensitivity_04_files/figure-html/sens3-1.png
docs/articles/simdata.html
docs/articles/vignette.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Var.data.cc.html
docs/reference/Var.data.html
docs/reference/alpha_to_logbf.html
docs/reference/approx.bf.estimates.html
docs/reference/approx.bf.p.html
docs/reference/bf-methods.html
docs/reference/bin2lin.html
docs/reference/check.alignment.html
docs/reference/check.dataset.html
docs/reference/check_alignment.html
docs/reference/check_dataset.html
docs/reference/coloc-class.html
docs/reference/coloc-package.html
docs/reference/coloc.abf.datasets.html
docs/reference/coloc.abf.html
docs/reference/coloc.abf.snpStats.html
docs/reference/coloc.bf_bf.html
docs/reference/coloc.bma-1.png
docs/reference/coloc.bma-2.png
docs/reference/coloc.bma-3.png
docs/reference/coloc.bma.html
docs/reference/coloc.detail.html
docs/reference/coloc.process.html
docs/reference/coloc.qq.html
docs/reference/coloc.signals.html
docs/reference/coloc.susie.html
docs/reference/coloc.susie_bf.html
docs/reference/coloc.test-1.png
docs/reference/coloc.test-2.png
docs/reference/coloc.test.html
docs/reference/coloc.test.summary.html
docs/reference/colocABF-class.html
docs/reference/colocPCs-class.html
docs/reference/coloc_test_data.html
docs/reference/combine.abf.html
docs/reference/est_cond.html
docs/reference/estgeno1.html
docs/reference/eta.html
docs/reference/figures/logo.png
docs/reference/figures/logo30.png
docs/reference/figures/logo50.png
docs/reference/fillin.html
docs/reference/find.best.signal.html
docs/reference/findends.html
docs/reference/findpeaks.html
docs/reference/finemap.abf.html
docs/reference/finemap.bf.html
docs/reference/finemap.signals.html
docs/reference/index.html
docs/reference/logbf_to_pp.html
docs/reference/logdiff.html
docs/reference/logsum.html
docs/reference/map_cond.html
docs/reference/map_mask.html
docs/reference/pcs.model.html
docs/reference/pcs.prepare.html
docs/reference/plot-methods.html
docs/reference/plot.coloc_abf.html
docs/reference/plot_dataset.html
docs/reference/print-methods.html
docs/reference/process.dataset.html
docs/reference/qq.onesnp.html
docs/reference/qq.twosnp.html
docs/reference/runsusie.html
docs/reference/sdY.est.html
docs/reference/sensitivity.html
docs/reference/subset_dataset.html
docs/reference/tbf2.html
docs/reference/tbf4.html
docs/sitemap.xml
inst/CITATION
inst/sticker.R
man/Var.data.Rd
man/Var.data.cc.Rd
man/annotate_susie.Rd
man/approx.bf.estimates.Rd
man/approx.bf.p.Rd
man/bin2lin.Rd
man/check_alignment.Rd
man/check_dataset.Rd
man/coloc-package.Rd
man/coloc.abf.Rd
man/coloc.bf_bf.Rd
man/coloc.detail.Rd
man/coloc.process.Rd
man/coloc.signals.Rd
man/coloc.susie.Rd
man/coloc.susie_bf.Rd
man/coloc_test_data.Rd
man/combine.abf.Rd
man/est_cond.Rd
man/estgeno1.Rd
man/figures/logo.png
man/figures/logo30.png
man/figures/logo50.png
man/find.best.signal.Rd
man/findends.Rd
man/findpeaks.Rd
man/finemap.abf.Rd
man/finemap.bf.Rd
man/finemap.signals.Rd
man/logbf_to_pp.Rd
man/logdiff.Rd
man/logsum.Rd
man/map_cond.Rd
man/map_mask.Rd
man/plot-methods.Rd
man/plot_dataset.Rd
man/print-methods.Rd
man/process.dataset.Rd
man/runsusie.Rd
man/sdY.est.Rd
man/sensitivity.Rd
man/subset_dataset.Rd
tests/testthat.R
tests/testthat/test-abf.R
tests/testthat/test-check.R
tests/testthat/test-examples.R
tests/testthat/test-susie.R
vignettes/a01_intro.Rmd
vignettes/a02_data.Rmd
vignettes/a03_enumeration.Rmd
vignettes/a04_sensitivity.Rmd
vignettes/a05_conditioning.Rmd
vignettes/a06_SuSiE.Rmd