coloc.susie_bf: run coloc using susie to detect separate signals

Description Usage Arguments Value Author(s)

View source: R/susie.R

Description

coloc for susie output + a separate BF matrix

Usage

1
coloc.susie_bf(dataset1, bf2, p1 = 1e-04, p2 = 1e-04, p12 = 5e-06, ...)

Arguments

dataset1

a list with specifically named elements defining the dataset to be analysed. See check_dataset for details.

bf2

named vector of BF, names are snp ids and will be matched to column names of susie object's alpha

p1

prior probability a SNP is associated with trait 1, default 1e-4

p2

prior probability a SNP is associated with trait 2, default 1e-4

p12

prior probability a SNP is associated with both traits, default 1e-5

...

other arguments passed to coloc.bf_bf, in particular prior values for causal association with one trait (p1, p2) or both (p12)

Value

coloc.signals style result

Author(s)

Chris Wallace


chr1swallace/coloc documentation built on June 10, 2021, 8:38 p.m.