Man pages for chr1swallace/coloc
Colocalisation Tests of Two Genetic Traits

alpha_to_logbfalpha_to_logbf
approx.bf.estimatesInternal function, approx.bf.estimates
approx.bf.pInternal function, approx.bf.p
bin2linbinomial to linear regression conversion
check_alignmentcheck alignment
check_datasetcheck_dataset
coloc.abfFully Bayesian colocalisation analysis using Bayes Factors
coloc.bf_bfColoc data through Bayes factors
coloc.detailBayesian colocalisation analysis with detailed output
coloc-packageColocalisation tests of two genetic traits
coloc.processPost process a coloc.details result using masking
coloc.signalsColoc with multiple signals per trait
coloc.susierun coloc using susie to detect separate signals
coloc.susie_bfrun coloc using susie to detect separate signals
coloc_test_dataSimulated data to use in testing and vignettes in the coloc...
combine.abfcombine.abf
est_condgenerate conditional summary stats
estgeno1estgeno1
find.best.signalPick out snp with most extreme Z score
finemap.abfBayesian finemapping analysis
finemap.signalsFinemap multiple signals in a single dataset
logbf_to_pplogbf 2 pp
logdifflogdiff
logsumlogsum
map_condfind the next most significant SNP, conditioning on a list of...
map_maskfind the next most significant SNP, masking a list of sigsnps
plot_datasetplot a coloc dataset
plot-methodsplot a coloc_abf object
print-methodsprint.coloc_abf
process.datasetprocess.dataset
runsusieRun susie on a single coloc-structured dataset
sdY.estEstimate trait variance, internal function
sensitivityPrior sensitivity for coloc
Var.dataVar.data
Var.data.ccVar.data
chr1swallace/coloc documentation built on June 10, 2021, 8:38 p.m.