Man pages for chr1swallace/coloc
Colocalisation Tests of Two Genetic Traits

annotate_susie	annotate susie_rss output for use with coloc_susie
approx.bf.estimates	Internal function, approx.bf.estimates
approx.bf.p	Internal function, approx.bf.p
bin2lin	binomial to linear regression conversion
check_alignment	check alignment
check_dataset	check_dataset
coloc.abf	Fully Bayesian colocalisation analysis using Bayes Factors
coloc.bf_bf	Coloc data through Bayes factors
coloc.detail	Bayesian colocalisation analysis with detailed output
coloc-package	Colocalisation tests of two genetic traits
coloc.process	Post process a coloc.details result using masking
coloc.signals	Coloc with multiple signals per trait
coloc.susie	run coloc using susie to detect separate signals
coloc.susie_bf	run coloc using susie to detect separate signals
coloc_test_data	Simulated data to use in testing and vignettes in the coloc...
combine.abf	combine.abf
est_cond	generate conditional summary stats
estgeno1	estgeno1
find.best.signal	Pick out snp with most extreme Z score
findends	trim a dataset to central peak(s)
findpeaks	trim a dataset to only peak(s)
finemap.abf	Bayesian finemapping analysis
finemap.bf	Finemap data through Bayes factors
finemap.signals	Finemap multiple signals in a single dataset
logbf_to_pp	logbf 2 pp
logdiff	logdiff
logsum	logsum
map_cond	find the next most significant SNP, conditioning on a list of...
map_mask	find the next most significant SNP, masking a list of sigsnps
plot_dataset	plot a coloc dataset
plot-methods	plot a coloc_abf object
print-methods	print.coloc_abf
process.dataset	process.dataset
runsusie	Run susie on a single coloc-structured dataset
sdY.est	Estimate trait variance, internal function
sensitivity	Prior sensitivity for coloc
subset_dataset	subset_dataset
Var.data	Var.data
Var.data.cc	Var.data