getGammaScore: This function calculates gamma from screen raw read counts

In chris-hsiung/bears01: What the Package Does (One Line, Title Case)

This function calculates gamma from screen raw read counts

Description

This function calculates gamma from screen raw read counts

Usage

getGammaScore(
  df,
  initcount,
  finalcount,
  spacertype = "spacertype",
  negctrllabel = "negctrl",
  doublings = "totaldoublings"
)

Arguments

df	is a data frame, must contain column names matching initcount, finalcount, and spacertype
initcount	is a string for name of column in df containing raw read counts of initial condition (e.g. T0 in growth screen)
finalcount	is a string for name of a column in df containing raw read counts of final condition (e.g. Tfinal in growth screen)
spacertype	string corresponding to column name in df that categorizes which rows are negative controls
negctrllabel	string corresponding to label given to negative controls in the column specified by spacertype
doublings	is a string for name of numeric column in df containing total number of cell population doublings between start and end of screen

Value

a data frame with gammascore added as column

chris-hsiung/bears01 documentation built on April 9, 2024, 2:01 a.m.