getCasesinRio: Get cases from an APS in Rio de Janeiro and aggregate them...
In claudia-codeco/AlertTools: utility functions for the Alerta Dengue System

Description Usage Arguments Value Examples

Get time series of cases per APS in Rio de Janeiro (special case)

getCasesinRio(
  APSid,
  lastday = Sys.Date(),
  cid10 = "A90",
  dataini = "sinpri",
  datasource = con
)

`APSid`	0(APS1), 1 (APS2.1), 2 (APS2.2), 3(APS3.1), 4(APS3.2), 5(APS3.3), 6(APS4), , 7(APS5.1), 8(APS5.2), 9(APS5.3)
`lastday`	end date of the time series
`cid10`	cid 10 disease code. A90 = dengue (default) , A920 = chikungunia
`dataini`	"sinpri" or "notific"(default)
`datasource`	Posgresql connection to project's database

data.frame with the data aggregated per health district and week

NOT USE: con <- dbConnect(RSQLite::SQLite(), "../../AlertaDengueAnalise/mydengue.sqlite")
dC = getCasesinRio(APSid = 0:9, datasource = con) # Rio de Janeiro
# Chikungunya:
dC1s = getCasesinRio(APSid = 0, cid10 = "A920", dataini = "sinpri", datasource = con) # Rio de Janeiro
tail(dC1)