pipe_infodengue_intra: 4 level alert Green-Yellow-Orange-Red for partitions within...

In claudia-codeco/AlertTools: utility functions for the Alerta Dengue System

Description

Yellow is raised when environmental conditions required for positive mosquito population growth are detected, green otherwise.Orange indicates evidence of sustained transmission, red indicates evidence of an epidemic scenario.

Usage

pipe_infodengue_intra(
  city,
  locs,
  datarelatorio,
  cid10 = "A90",
  iniSE = 201001,
  delaymethod = "none",
  narule = "arima",
  finalday = Sys.Date(),
  dataini = "sinpri",
  datasource = con
)

Arguments

city	geocode (one city at a time). Currently only works for Rio.
locs	subset of localities. Currently not used.
datarelatorio	last epidemiological week (format = 201401)
cid10	default is A90 (dengue). Chik = A920.
iniSE	first epidemiological week
delaymethod	"none" (Default) or "bayesian"
narule	how to fill climate missing data (arima is the only option)
dataini	"sinpri" or "notif". Default = "sinpri"
datasource	name of the sql connection.

Value

list with an alert object for each APS.

Examples

alerio <- pipe_infodengue_intra(city = 3304557, datarelatorio=202113, 
delaymethod="bayesian", cid10 = "A90", dataini = "sinpri")
ale.chik <- pipe_infodengue_intra(city = 3304557, datarelatorio = 202108, 
iniSE = 201001, cid10 = "A920", dataini = "sinpri", delaymethod = "bayesian")

claudia-codeco/AlertTools documentation built on Aug. 12, 2021, 9:58 a.m.