plot_alerta: Plot the time series of infodengue's alert levels for one or...

In claudia-codeco/AlertTools: utility functions for the Alerta Dengue System

Description

Function to plot the output of tabela_historico.

Usage

plot_alerta(
  obj,
  geocodigo,
  var = "casos",
  cores = c("#0D6B0D", "#C8D20F", "orange", "red"),
  ini = 201001,
  fim = 202001,
  ylab = var,
  yrange,
  salvar = FALSE,
  nome.fig = "grafico",
  datasource = con
)

Arguments

obj	object created by tabela_historico() or from the pipeline.
geocodigo	city's geocode. If missing, plots for all cities will be created.
var	variable to be plotted, usually "cases", or "inc".
cores	colors corresponding to the levels 1, 2, 3, 4.
ini	first epidemiological week. If not stated, use the first one available
fim	last epidemiological week. If not stated, use the last one available
ylab	y axis label
yrange	y axis range
salvar	TRUE to save the figure (default is FALSE)
nome.fig	figure name (default is "grafico")

Value

a plot for each city

Examples

# Parameters for the model
cidades <- getCidades(regional = "Norte",uf = "Rio de Janeiro")
res <- pipe_infodengue(cities = cidades$municipio_geocodigo, cid10 = "A90", 
finalday= "2018-08-12",nowcasting="none")
restab <- tabela_historico(res)
plot_alerta(restab, geocodigo = cidades$municipio_geocodigo, var="casos")

claudia-codeco/AlertTools documentation built on Aug. 12, 2021, 9:58 a.m.