applyGenTimeDist: Calculate matrix of generation time distribution for cities...
In claudia-codeco/AlertTools: utility functions for the Alerta Dengue System

Description Usage Arguments Value Examples

Calculate the generation time for cities or from meteorological stations

1	applyGenTimeDist(cities, stations, cid10 = "A90", datasource = con, ...)

`cities`	: vector of geocodes
`stations`	: vector of meteorological stations
`cid10`	: "A90" for dengue, "A92" for chikungunya, "A92.8" for zika
`datasource`	: sql connection
`ini`	: initial date (Date or epidemiological week)
`end`	: final date (Date or epidemiological week)

list of generation time distributions matrices

1
2
3

cid <- getCidades(uf="Rio de Janeiro")$municipio_geocodigo
gt <- applyGenTimeDist(stations = c("SBGL","SBJR"), cid10 = "A90")
system.time(gt <- applyGenTimeDist(cities = cid, cid10 = "A90"))