cmmr/rbiom: Read/Write, Transform, and Summarize 'BIOM' Data
Version 1.0.0

A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

Getting started

Package details

Maintainer
LicenseAGPL-3
Version1.0.0
URL https://cmmr.github.io/rbiom/index.html
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("cmmr/rbiom")
cmmr/rbiom documentation built on Aug. 22, 2018, 1:01 p.m.