Write, Analyze, and Visualize 'BIOM' Data

Global functions
%<>%	Man page
%>%	Man page
.	Man page
.onLoad	Source code
[.rbiom	Man page
`$.rbiom_tbl`	Source code
adiv_boxplot	Man page
adiv_corrplot	Man page
adiv_matrix	Man page
adiv_stats	Man page
adiv_table	Man page
alpha.div	Man page
alpha.div-deprecated	Man page
as.list.rbiom	Man page
as.percent	Man page
as.percent-deprecated	Man page
as_rbiom	Man page Source code
babies	Man page
bdiv_boxplot	Man page
bdiv_clusters	Man page
bdiv_corrplot	Man page
bdiv_distmat	Man page
bdiv_heatmap	Man page
bdiv_matrix	Man page
bdiv_ord_plot	Man page
bdiv_ord_table	Man page
bdiv_stats	Man page
bdiv_table	Man page
bdply	Man page
beta.div	Man page
beta.div-deprecated	Man page
biom_file_format	Man page
biom_merge	Man page
blply	Man page
comments	Man page
comments-deprecated	Man page
comments-set-deprecated	Man page
comments<-	Man page
convert_to_SE	Man page
convert_to_TSE	Man page
counts	Man page
counts-deprecated	Man page
counts-set-deprecated	Man page
counts<-	Man page
ddply	Man page
depth	Man page
depth-deprecated	Man page
depths_barplot	Man page
depths_barplot-deprecated	Man page
distmat_ord_table	Man page
distmat_stats	Man page
documentation_biom.rbiom	Man page
documentation_clusters	Man page
documentation_cmp	Man page
documentation_default	Man page
documentation_dist_test	Man page
documentation_heatmap	Man page
documentation_plot_return	Man page
documentation_rank.NULL	Man page
documentation_return.biom	Man page
documentation_taxa.4	Man page
gems	Man page
glimpse	Man page
glimpse.rbiom	Man page
has.phylogeny	Man page
has.phylogeny-deprecated	Man page
has.sequences	Man page
has.sequences-deprecated	Man page
hmp50	Man page
id	Man page
id-deprecated	Man page
id-set-deprecated	Man page
id<-	Man page
info	Man page
info-deprecated	Man page
is.rarefied	Man page
is.rarefied-deprecated	Man page
ldply	Man page
left_join	Man page
llply	Man page
metadata	Man page
metadata-deprecated	Man page
metadata-set-deprecated	Man page
metadata<-	Man page
modify_metadata	Man page
mutate	Man page
mutate.rbiom	Man page
na.omit	Man page
na.omit.rbiom	Man page
nsamples	Man page
nsamples-deprecated	Man page
ntaxa	Man page
ntaxa-deprecated	Man page
par_beta_div	Source code
par_unifrac	Source code
phylogeny	Man page
phylogeny-deprecated	Man page
phylogeny-set-deprecated	Man page
phylogeny<-	Man page
plot_heatmap	Man page
pull	Man page
pull.rbiom	Man page
rare_corrplot	Man page
rare_multiplot	Man page
rare_stacked	Man page
rarefy	Man page
rarefy_cols	Man page
rbiom	Man page
rbiom-deprecated	Man page
rbiom-package	Man page
rbiom_objects	Man page
rcpp_alpha_div	Source code
rcpp_rarefy	Source code
rcpp_read_tree	Source code
read.biom	Man page
read.biom-deprecated	Man page
read.fasta	Man page
read.fasta-deprecated	Man page
read.tree	Man page
read.tree-deprecated	Man page
read_biom	Man page
read_biom-deprecated	Man page
read_fasta	Man page
read_tree	Man page
reexports	Man page
relocate	Man page
rename	Man page
rename.rbiom	Man page
repair	Man page
repair-deprecated	Man page
rescale_cols	Man page
rescale_rows	Man page
sample.names	Man page
sample.names-deprecated	Man page
sample.names-set-deprecated	Man page
sample.names<-	Man page
sample.sums	Man page
sample.sums-deprecated	Man page
sample_apply	Man page
sample_subset	Man page
sample_subset-deprecated	Man page
sample_sums	Man page
select	Man page
select-deprecated	Man page
select.rbiom	Man page
sequences	Man page
sequences-deprecated	Man page
sequences-set-deprecated	Man page
sequences<-	Man page
slice	Man page
slice.rbiom	Man page
slice_head	Man page
slice_head.rbiom	Man page
slice_max	Man page
slice_max.rbiom	Man page
slice_metadata	Man page
slice_min	Man page
slice_min.rbiom	Man page
slice_sample	Man page
slice_sample.rbiom	Man page
slice_tail	Man page
slice_tail.rbiom	Man page
speed	Man page
stats_boxplot	Man page
stats_corrplot	Man page
stats_table	Man page
subset	Man page
subset.rbiom	Man page
subtree	Man page
subtree-deprecated	Man page
taxa.means	Man page
taxa.means-deprecated	Man page
taxa.names	Man page
taxa.names-deprecated	Man page
taxa.names-set-deprecated	Man page
taxa.names<-	Man page
taxa.ranks	Man page
taxa.ranks-deprecated	Man page
taxa.ranks-set-deprecated	Man page
taxa.ranks<-	Man page
taxa.rollup	Man page
taxa.rollup-deprecated	Man page
taxa.sums	Man page
taxa.sums-deprecated	Man page
taxa_apply	Man page
taxa_boxplot	Man page
taxa_clusters	Man page
taxa_corrplot	Man page
taxa_heatmap	Man page
taxa_map	Man page
taxa_matrix	Man page
taxa_max	Man page
taxa_max-deprecated	Man page
taxa_means	Man page
taxa_stacked	Man page
taxa_stats	Man page
taxa_sums	Man page
taxa_table	Man page
taxonomy	Man page
taxonomy-deprecated	Man page
taxonomy-set-deprecated	Man page
taxonomy<-	Man page
tips	Man page
tips-deprecated	Man page
top.taxa	Man page
top.taxa-deprecated	Man page
top_taxa	Man page
top_taxa-deprecated	Man page
tree_subset	Man page
unifrac	Man page
unifrac-deprecated	Man page
with	Man page
with.rbiom	Man page
within.rbiom	Man page
write.biom	Man page
write.biom-deprecated	Man page
write.fasta	Man page
write.fasta-deprecated	Man page
write.tree	Man page
write.tree-deprecated	Man page
write.xlsx	Man page
write.xlsx-deprecated	Man page
write_biom	Man page
write_counts	Man page
write_fasta	Man page
write_metadata	Man page
write_taxonomy	Man page
write_tree	Man page
write_xlsx	Man page