API for cmmr/rbiom
Read/Write, Analyze, and Visualize 'BIOM' Data

Global functions
%<>% Man page
%>% Man page
. Man page
.onLoad Source code
[.rbiom Man page
`$.rbiom_tbl` Source code
adiv_boxplot Man page
adiv_corrplot Man page
adiv_matrix Man page
adiv_stats Man page
adiv_table Man page
alpha.div Man page
alpha.div-deprecated Man page
as.list.rbiom Man page
as.percent Man page
as.percent-deprecated Man page
as_rbiom Man page Source code
babies Man page
bdiv_boxplot Man page
bdiv_clusters Man page
bdiv_corrplot Man page
bdiv_distmat Man page
bdiv_heatmap Man page
bdiv_matrix Man page
bdiv_ord_plot Man page
bdiv_ord_table Man page
bdiv_stats Man page
bdiv_table Man page
bdply Man page
beta.div Man page
beta.div-deprecated Man page
biom_file_format Man page
biom_merge Man page
blply Man page
comments Man page
comments-deprecated Man page
comments-set-deprecated Man page
comments<- Man page
convert_to_SE Man page
convert_to_TSE Man page
counts Man page
counts-deprecated Man page
counts-set-deprecated Man page
counts<- Man page
ddply Man page
depth Man page
depth-deprecated Man page
depths_barplot Man page
depths_barplot-deprecated Man page
distmat_ord_table Man page
distmat_stats Man page
documentation_biom.rbiom Man page
documentation_clusters Man page
documentation_cmp Man page
documentation_default Man page
documentation_dist_test Man page
documentation_heatmap Man page
documentation_plot_return Man page
documentation_rank.NULL Man page
documentation_return.biom Man page
documentation_taxa.4 Man page
gems Man page
glimpse Man page
glimpse.rbiom Man page
has.phylogeny Man page
has.phylogeny-deprecated Man page
has.sequences Man page
has.sequences-deprecated Man page
hmp50 Man page
id Man page
id-deprecated Man page
id-set-deprecated Man page
id<- Man page
info Man page
info-deprecated Man page
is.rarefied Man page
is.rarefied-deprecated Man page
ldply Man page
left_join Man page
llply Man page
metadata Man page
metadata-deprecated Man page
metadata-set-deprecated Man page
metadata<- Man page
modify_metadata Man page
mutate Man page
mutate.rbiom Man page
na.omit Man page
na.omit.rbiom Man page
nsamples Man page
nsamples-deprecated Man page
ntaxa Man page
ntaxa-deprecated Man page
par_beta_div Source code
par_unifrac Source code
phylogeny Man page
phylogeny-deprecated Man page
phylogeny-set-deprecated Man page
phylogeny<- Man page
plot_heatmap Man page
pull Man page
pull.rbiom Man page
rare_corrplot Man page
rare_multiplot Man page
rare_stacked Man page
rarefy Man page
rarefy_cols Man page
rbiom Man page
rbiom-deprecated Man page
rbiom-package Man page
rbiom_objects Man page
rcpp_alpha_div Source code
rcpp_rarefy Source code
rcpp_read_tree Source code
read.biom Man page
read.biom-deprecated Man page
read.fasta Man page
read.fasta-deprecated Man page
read.tree Man page
read.tree-deprecated Man page
read_biom Man page
read_biom-deprecated Man page
read_fasta Man page
read_tree Man page
reexports Man page
relocate Man page
rename Man page
rename.rbiom Man page
repair Man page
repair-deprecated Man page
rescale_cols Man page
rescale_rows Man page
sample.names Man page
sample.names-deprecated Man page
sample.names-set-deprecated Man page
sample.names<- Man page
sample.sums Man page
sample.sums-deprecated Man page
sample_apply Man page
sample_subset Man page
sample_subset-deprecated Man page
sample_sums Man page
select Man page
select-deprecated Man page
select.rbiom Man page
sequences Man page
sequences-deprecated Man page
sequences-set-deprecated Man page
sequences<- Man page
slice Man page
slice.rbiom Man page
slice_head Man page
slice_head.rbiom Man page
slice_max Man page
slice_max.rbiom Man page
slice_metadata Man page
slice_min Man page
slice_min.rbiom Man page
slice_sample Man page
slice_sample.rbiom Man page
slice_tail Man page
slice_tail.rbiom Man page
speed Man page
stats_boxplot Man page
stats_corrplot Man page
stats_table Man page
subset Man page
subset.rbiom Man page
subtree Man page
subtree-deprecated Man page
taxa.means Man page
taxa.means-deprecated Man page
taxa.names Man page
taxa.names-deprecated Man page
taxa.names-set-deprecated Man page
taxa.names<- Man page
taxa.ranks Man page
taxa.ranks-deprecated Man page
taxa.ranks-set-deprecated Man page
taxa.ranks<- Man page
taxa.rollup Man page
taxa.rollup-deprecated Man page
taxa.sums Man page
taxa.sums-deprecated Man page
taxa_apply Man page
taxa_boxplot Man page
taxa_clusters Man page
taxa_corrplot Man page
taxa_heatmap Man page
taxa_map Man page
taxa_matrix Man page
taxa_max Man page
taxa_max-deprecated Man page
taxa_means Man page
taxa_stacked Man page
taxa_stats Man page
taxa_sums Man page
taxa_table Man page
taxonomy Man page
taxonomy-deprecated Man page
taxonomy-set-deprecated Man page
taxonomy<- Man page
tips Man page
tips-deprecated Man page
top.taxa Man page
top.taxa-deprecated Man page
top_taxa Man page
top_taxa-deprecated Man page
tree_subset Man page
unifrac Man page
unifrac-deprecated Man page
with Man page
with.rbiom Man page
within.rbiom Man page
write.biom Man page
write.biom-deprecated Man page
write.fasta Man page
write.fasta-deprecated Man page
write.tree Man page
write.tree-deprecated Man page
write.xlsx Man page
write.xlsx-deprecated Man page
write_biom Man page
write_counts Man page
write_fasta Man page
write_metadata Man page
write_taxonomy Man page
write_tree Man page
write_xlsx Man page
cmmr/rbiom documentation built on Aug. 11, 2024, 6:35 a.m.