Global functions | |
---|---|
.get_cache | Source code |
MetaScope | Man page |
MetaScope-package | Man page |
add_in_taxa | Man page Source code |
add_in_taxa_ncbi | Man page Source code |
add_in_taxa_silva | Source code |
align_details | Man page |
align_target | Man page Source code |
align_target_bowtie | Man page Source code |
bam_reheader_R | Man page Source code |
blast_reassignment | Man page Source code |
blast_result_metrics | Man page Source code |
blastn_results | Man page Source code |
blastn_seqs | Source code |
blastn_single_result | Man page Source code |
bt2_16S_params | Man page |
bt2_missing_params | Man page |
bt2_regular_params | Man page |
check_blastn_exists | Man page Source code |
check_samtools_exists | Man page Source code |
class_taxon | Source code |
combined_header | Man page Source code |
comp_line | Source code |
convert_animalcules | Man page Source code |
convert_animalcules_patho | Man page Source code |
convert_animalcules_silva | Man page Source code |
count_matches | Man page Source code |
create_MAE | Source code |
create_qiime_biom | Source code |
download_genomes | Source code |
download_parentkingdom | Source code |
download_refseq | Man page Source code |
errmessages | Source code |
extract_reads | Man page Source code |
fill_in_missing | Source code |
filter_host | Man page Source code |
filter_host_bowtie | Man page Source code |
filter_unmapped_reads | Man page Source code |
find_accessions | Source code |
find_strains | Source code |
get_alignscore | Source code |
get_assignments | Source code |
get_children | Man page Source code |
get_max_index_matrix | Source code |
get_multi_seqs | Man page Source code |
get_seqs | Man page Source code |
get_speciestab | Source code |
get_table | Source code |
id_kingdom_rank | Source code |
identify_rnames | Source code |
locations | Man page Source code |
merge_bam_files | Man page Source code |
meta_demultiplex | Man page Source code |
metascope_blast | Man page Source code |
metascope_id | Man page |
missing_acc_finder | Source code |
mk_bowtie_index | Man page Source code |
mk_interim_fastq | Source code |
mk_subread_index | Man page Source code |
mk_table | Source code |
obtain_reads | Source code |
organize_tax_counts | Source code |
read_in_id | Source code |
read_in_id_silva | Source code |
reduceByYield_RM | Source code |
reduceByYield_iterate | Source code |
remove_matches | Man page Source code |
taxid_to_name | Man page Source code |
transform_cols | Source code |
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