add.cell.cycle: Scores cell cycle phases

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Scores cell cycle phases

Description

Scores each cell in which cell cycle stage it is currently in.

Usage

add.cell.cycle(object = obj, assay = 'RAW', slot = 'counts')

Arguments

object	IBRAP S4 class object
assay	A character string containing indicating which assay to use
slot	String indicating which slot within the assay should be sourced
transform	Boolean. If raw counts are supplied, this must be TRUE to normalise data
verbose	Logical should function messages be printed?
seed	Numerical What seed should be set. Default = 1234

Value

IBRAP S4 class object containing cell cycle assignments and scores for each cell in the metadata

Examples

object <- add.cell.cycle(object = object, 

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.