createIBRAPobject: Create an IBRAP class object

View source: R/createIBRAPobject.R

createIBRAPobjectR Documentation

Create an IBRAP class object

Description

Creates and produces project metadata into an IBRAP S4 class object

Usage

createIBRAPobject(counts = counts, original.project = 'project_1', meta.data = df, min.cells = 3, min.features = 200)

Arguments

counts

Counts matrix

original.project

Character string naming the project

meta.data

data.frame of extra metadata to append to generated dataframe. Warning: Must be in the same order and colnames

min.cells

Numerical value of the minimum number of cells a gene should be present in

min.features

Numerical value minimum features that should be present in a cell

verbose

Logical. Should function information be printed?

Value

IBRAP S4 class object containing raw counts and metadata

Examples

object <- createIBRAPobject(counts = counts,
                                      meta.data = metadata_df,
                                      original.project = 'bmmc',
                                      min.cells = 3,
                                      min.features = 200)


connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.