perform.gsea: Returnas gene set enrichment scores for indivdiual cells

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Returnas gene set enrichment scores for indivdiual cells

Description

calculates gene set enrichment scores

Usage

perform.gsea(object = obj)

Arguments

object	IBRAP S4 class object
gene.sets	Either a GeneSetCollection derived from escape::getGeneSets() or a list of genes with their grouping as the list item name. Default = escape::getGeneSets(library = 'H')
groups	Numerical. The number of groups the cells should be split into. Default = 1000.
cores	Numerical. The number of cores to commit to the calculations.
return_object	Logical. Whether to return an updated IBRAP object

Value

IBRAP S4 class object containing module scores for each cell in the metadata

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.