perform.gsea | R Documentation |
calculates gene set enrichment scores
perform.gsea(object = obj)
object |
IBRAP S4 class object |
gene.sets |
Either a GeneSetCollection derived from escape::getGeneSets() or a list of genes with their grouping as the list item name. Default = escape::getGeneSets(library = 'H') |
groups |
Numerical. The number of groups the cells should be split into. Default = 1000. |
cores |
Numerical. The number of cores to commit to the calculations. |
return_object |
Logical. Whether to return an updated IBRAP object |
IBRAP S4 class object containing module scores for each cell in the metadata
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.