perform.gsea: Returnas gene set enrichment scores for indivdiual cells

View source: R/perform.gsea.R

perform.gseaR Documentation

Returnas gene set enrichment scores for indivdiual cells

Description

calculates gene set enrichment scores

Usage

perform.gsea(object = obj)

Arguments

object

IBRAP S4 class object

gene.sets

Either a GeneSetCollection derived from escape::getGeneSets() or a list of genes with their grouping as the list item name. Default = escape::getGeneSets(library = 'H')

groups

Numerical. The number of groups the cells should be split into. Default = 1000.

cores

Numerical. The number of cores to commit to the calculations.

return_object

Logical. Whether to return an updated IBRAP object

Value

IBRAP S4 class object containing module scores for each cell in the metadata


connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.