add.feature.score: Provides scores for a given vector of features

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Provides scores for a given vector of features

Description

Produces a module score per cell for the supplied genes

Usage

add.cell.cycle(object = obj, assay = 'RAW', slot = 'counts')

Arguments

object	IBRAP S4 class object
assay	A character string containing indicating which assay to use
slot	String indicating which slot within the assay should be sourced
transform	Boolean. If raw counts are supplied, this must be TRUE to normalise data
features	A character vector of genes to be scored
column.name	Character naming the column containing the scores in the metadata dataframe
verbose	Logical should function messages be printed?
seed	Numerical What seed should be set. Default = 1234

Value

IBRAP S4 class object containing module scores for each cell in the metadata

Examples

# object <- add.feature.score(object = object, 

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.