Man pages for crazyhottommy/scclusteval
Evaluate the single cell clustering
| AssignHighestJaccard | Assign highest Jaccard index for each cluster of the... |
| AssignStableCluster | Assign stable cluster |
| CalculatePercentCellInStable | Calculate the percentage of cells in stable clusters in the... |
| CalculateSilhouette | Calculate Silhouette width from PCA space for each cell after... |
| ClusterIdentityChordPlot | Plot ChordDiagram of cell identity changes between two runs... |
| ClusterSizeBarplot | Make a Barplot for cluster size |
| geom_flat_violin | A Flat Violin plot |
| idents | cluster identity of subsetted pbmc data |
| JaccardRainCloudPlot | Plot the Jaccard index distribution using raincloud plot |
| JaccardSets | Calculate jaccard distance for two sets of character vectors |
| MatchClusters | Match two run of cluster ids with highest Jaccard index |
| MergeMultipleSeuratObjects | Read multiple 10x run into Seurat objects and merge into a... |
| PairWiseJaccardSets | Calculate pair-wise Jaccard distance for @ident slots from... |
| PairWiseJaccardSetsHeatmap | Make a Heatmap of the pairwise Jaccard distance between... |
| PairWiseOverlappingIdents | Calculate pair-wise overlapping cluster identities for @ident... |
| ParameterSetScatterPlot | Plot a scatter plot for different clustering parameters |
| pipe | Pipe operator |
| PreprocessSubsetData | A wrapper for preprocessing subsetted Seurat object |
| PreprocessSubsetDataV2 | A wrapper for preprocessing subsetted Seurat object using... |
| RandomSubsetData | Randomly subset (cells) seurat object by a rate |
| scClusterBoot | Bootstrap for a fully processed Seurat object |
| scclusteval-package | scclusteval: Evaluate the single cell clustering |
| SilhouetteRainCloudPlot | Plot raincloud plot for silhouette score |
