ParameterSetScatterPlot: Plot a scatter plot for different clustering parameters

In crazyhottommy/scclusteval: Evaluate the single cell clustering

Description

x-axis is the parameters tested (e.g. many different k.param) y-axis is the total number of clusters and total number of stable clusters based on the jaccard cutoff as determined by AssignStableClusters, or precentage of cells in stable clusters.

Usage

ParameterSetScatterPlot(
  stable_clusters,
  fullsample_idents,
  x_var,
  y_var,
  facet_rows,
  facet_cols
)

Arguments

stable_clusters	a dataframe with list-columns for data, stable_cluster determined by AssignStableCluster and the rest of the columns are pc, resolution and k_param.
fullsample_idents	a dataframe with the list-column contain the original ident for the full dataset. This is the direct output from the Snakemake workflow.
x_var	one of "pc", "resolution" and "k_param".
y_var	one of "number" or "percentage". If it is "number", y-axis si the total number of clusters and total number of stable clusters.
facet_rows	one of "pc", "resolution" and "k_param" for ggplot2 to facet.
facet_cols	one of "pc", "resolution" and "k_param" for ggplot2 to facet.

Value

a ggplot2 object

crazyhottommy/scclusteval documentation built on Aug. 5, 2021, 3:20 p.m.