CalculateSilhouette: Calculate Silhouette width from PCA space for each cell after...

In crazyhottommy/scclusteval: Evaluate the single cell clustering

Description

Calculate Silhouette width from PCA space for each cell after clustering This is calculated from Seurat object

Usage

CalculateSilhouette(object, dims = 1:50)

Arguments

object	A Seurat object with Idents set to cluster ids (factors)
dims	default 1:50 dimension to use in the PCA space to calculate eucledian distance

Value

a dataframe with silhouette width for each cell. see also silhouette

Examples

CalculateSilhouette(pbmc_small, dims = 1:15)

crazyhottommy/scclusteval documentation built on Aug. 5, 2021, 3:20 p.m.