PairWiseJaccardSetsHeatmap: Make a Heatmap of the pairwise Jaccard distance between...

In crazyhottommy/scclusteval: Evaluate the single cell clustering

Description

Make a Heatmap of the pairwise Jaccard distance between cluster ident of two Seurat object

Usage

PairWiseJaccardSetsHeatmap(
  ident1,
  ident2,
  best_match = FALSE,
  title = NULL,
  col_low = "white",
  col_high = "red",
  cluster_rows = F,
  cluster_columns = F,
  show_row_dend = F,
  show_column_dend = F,
  ...
)

Arguments

ident1	a named factor vector. names are the cell names, the values are the cluster id.
ident2	a named factor vector. names are the cell names, the values are the cluster id.
best_match	Whether or not only show the best match of ident1 from ident2. if set to TRUE, the Jaccard index matrix will be subsetted using the ident2 column from the output of MatchClusters, the row order will be in order from cluster 0 to the total number of clusters, the columns will be the best match of ident1 from ident2, and the columns idents could be duplicated. e.g. single cluster from ident2 matches multiple clusters in ident1.
title	The title of the heatmap
col_low	Color for low Jaccard index.
col_high	Color for high Jaccard index.
cluster_rows	cluster row or not, default FALSE
cluster_columns	cluster columns or not, default FASLE
show_row_dend	Whether or not show row dendrogram
show_column_dend	Whether or not show column dendrogram
...	other parameters pass to Heatmap

Value

A Heatmap representing the pair-wise Jaccard correlation, rows are ident1, columns are ident2

crazyhottommy/scclusteval documentation built on Aug. 5, 2021, 3:20 p.m.