Man pages for csoneson/alevinQC
Generate QC Reports For Alevin Output
| alevinQC-package | alevinQC |
| checkAlevinFryInputFiles | Check that all required input files are available for... |
| checkAlevinInputFiles | Check that all required input files are available |
| plotAlevinBarcodeCollapse | Summary plot of cell barcode collapsing |
| plotAlevinHistogram | Histogram of selected summary statistic |
| plotAlevinKneeNbrGenes | Knee plot of the number of detected genes per cell |
| plotAlevinKneeRaw | Knee plot of raw cell barcode frequencies |
| plotAlevinQuant | Panel of plots with quantification summary statistics |
| plotAlevinQuantPairs | Pairs plot with quantification summary statistics |
| qcReport | Generate alevin/alevin-fry summary report |
| qcShiny | Generate alevin/alevin-fry summary shiny app |
| readAlevinFryQC | Read alevin-fry data required to generate summary report |
| readAlevinQC | Read alevin data required to generate summary report |
