plotAlevinBarcodeCollapse: Summary plot of cell barcode collapsing
In csoneson/alevinQC: Generate QC Reports For Alevin Output

View source: R/plotAlevinBarcodeCollapse.R

plotAlevinBarcodeCollapse

R Documentation

Summary plot of cell barcode collapsing

Description

Plot the original frequency of each cell barcode in the original whitelist against the frequency after collapsing similar cell barcodes.

Usage

plotAlevinBarcodeCollapse(
  cbTable,
  firstSelColName = "inFirstWhiteList",
  countCol = "collapsedFreq"
)

Arguments

`cbTable`	`data.frame` (such as the `cbTable` returned by `readAlevinQC` or `readAlevinFryQC`) with barcode frequencies before and after collapsing.
`firstSelColName`	Character scalar indicating the name of the logical column in `cbTable` that corresponds to the original selection of barcodes for quantification.
`countCol`	Character scalar indicating the name of the column in `cbTable` that corresponds to the collapsed barcode frequencies.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinBarcodeCollapse(alevin$cbTable)

csoneson/alevinQC documentation built on April 7, 2024, 8:20 p.m.