plotAlevinKneeNbrGenes: Knee plot of the number of detected genes per cell
In csoneson/alevinQC: Generate QC Reports For Alevin Output

plotAlevinKneeNbrGenes

R Documentation

Knee plot of the number of detected genes per cell

Description

Plot the number of detected genes per cell in decreasing order. Only cells contained in the original whitelist are considered.

Usage

plotAlevinKneeNbrGenes(cbTable, firstSelColName = "inFirstWhiteList")

Arguments

`cbTable`	`data.frame` (such as the `cbTable` returned by `readAlevinQC` or `readAlevinFryQC`) with the number of detected genes per cell.
`firstSelColName`	Character scalar indicating the name of the logical column in `cbTable` that corresponds to the original selection of barcodes for quantification.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinKneeNbrGenes(alevin$cbTable)

csoneson/alevinQC documentation built on Nov. 6, 2024, 7:42 a.m.