plotAlevinQuantPairs: Pairs plot with quantification summary statistics

In csoneson/alevinQC: Generate QC Reports For Alevin Output

Pairs plot with quantification summary statistics

Description

Pairs plot with quantification summary statistics

Usage

plotAlevinQuantPairs(
  cbTable,
  colName = "inFinalWhiteList",
  firstSelColName = "inFirstWhiteList"
)

Arguments

cbTable	data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) with collapsed barcode frequencies, the total UMI count and the number of detected genes for each cell.
colName	Character scalar giving the name of a logical column of cbTable to use for coloring the points.
firstSelColName	Character scalar indicating the name of the logical column in cbTable that corresponds to the original selection of barcodes for quantification.

Value

A ggmatrix object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinQuantPairs(alevin$cbTable, colName = "inFinalWhiteList")

csoneson/alevinQC documentation built on April 7, 2024, 8:20 p.m.