plotAlevinHistogram: Histogram of selected summary statistic
In csoneson/alevinQC: Generate QC Reports For Alevin Output

plotAlevinHistogram

R Documentation

Histogram of selected summary statistic

Description

Histogram of selected summary statistic

Usage

plotAlevinHistogram(
  cbTable,
  plotVar = "dedupRate",
  axisLabel = plotVar,
  colName = "inFinalWhiteList",
  cbName = "final whitelist",
  firstSelColName = "inFirstWhiteList"
)

Arguments

`cbTable`	`data.frame` (such as the `cbTable` returned by `readAlevinQC` or `readAlevinFryQC`) containing the desired summary statistic in a column.
`plotVar`	Character scalar giving the name of a numeric column of `cbTable` to plot.
`axisLabel`	Character scalar giving the label of the selected statistic (will be displayed as the axis label in the plot).
`colName`	Character scalar giving the name of a logical column of `cbTable` to use for filling the bars in the histogram.
`cbName`	Character scalar giving the name of the set of barcodes defined by `colName`, used for labelling the plot legend.
`firstSelColName`	Character scalar indicating the name of the logical column in `cbTable` that corresponds to the original selection of barcodes for quantification.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinHistogram(alevin$cbTable, plotVar = "dedupRate",
                    axisLabel = "Deduplication rate",
                    colName = "inFinalWhiteList",
                    cbName = "final whitelist")

csoneson/alevinQC documentation built on May 3, 2024, 4:46 p.m.