readAlevinQC: Read alevin data required to generate summary report

In csoneson/alevinQC: Generate QC Reports For Alevin Output

Read alevin data required to generate summary report

Description

Read all alevin output files required to generate the summary report or shiny app.

Usage

readAlevinQC(baseDir, customCBList = list())

Arguments

baseDir	Path to the output directory from the alevin run (should be the directory containing the alevin directory).
customCBList	Named list with custom set(s) of barcodes to provide summary statistics/plots for, in addition to the whitelists generated by alevin.

Value

A list collecting all necessary information for generating the summary report/shiny app.

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                       package = "alevinQC"))

csoneson/alevinQC documentation built on April 7, 2024, 8:20 p.m.