checkAlevinFryInputFiles: Check that all required input files are available for...
In csoneson/alevinQC: Generate QC Reports For Alevin Output

View source: R/checkAlevinFryInputFiles.R

checkAlevinFryInputFiles

R Documentation

Check that all required input files are available for alevin-fry

Description

Check that all required input files are available for alevin-fry

Usage

checkAlevinFryInputFiles(mapDir, permitDir, quantDir)

Arguments

`mapDir`	Path to the directory containing the map.rad file
`permitDir`	Path to the output directory of the alevin-fry generate-permit-list command.
`quantDir`	Path to the output of the alevin-fry quant command.

Value

Returns nothing, raises an error if any of the required files are missing.

Author(s)

Charlotte Soneson

Examples

checkAlevinFryInputFiles(
    mapDir = system.file("extdata/alevinfry_example_v0.5.0/map",
                         package = "alevinQC"),
    permitDir = system.file("extdata/alevinfry_example_v0.5.0/permit",
                            package = "alevinQC"),
    quantDir = system.file("extdata/alevinfry_example_v0.5.0/quant",
                           package = "alevinQC"))

csoneson/alevinQC documentation built on Nov. 6, 2024, 7:42 a.m.