check_phyloCompData: Check the validity of a 'phyloCompData' object

In csoneson/compcodeR: RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

Check the validity of a phyloCompData object

Description

Check the validity of a phyloCompData object. An object that passes the check can be used as the input for the differential expression analysis methods interfaced by compcodeR.

Usage

check_phyloCompData(object)

Arguments

object

A phyloCompData object

Author(s)

Charlotte Soneson, Paul Bastide

Examples

mydata <- generateSyntheticData(dataset = "mydata", n.vars = 1000, 
                                samples.per.cond = 5, n.diffexp = 100,
                                id.species = factor(1:10),
                                tree = ape::rphylo(10, 1, 0),
                                lengths.relmeans = "auto", lengths.dispersions = "auto")
check_phyloCompData(mydata)

csoneson/compcodeR documentation built on Oct. 25, 2023, 1:28 a.m.