phylolm_analysis: Perform the phylolm analysis

View source: R/phylolmMethods.R

phylolm_analysisR Documentation

Perform the phylolm analysis

Description

Perform the phylolm analysis for a given gene.

Usage

phylolm_analysis(
  dat,
  design_data,
  design_formula,
  tree,
  model,
  measurement_error,
  ...
)

Arguments

dat

the data associated with a gene

design_data

design matrix

design_formula

design formula

tree

phylogenetic tree

model

the model to be used in phylolm

measurement_error

boolean

Value

A list, with:

pvalue

the p value of the differential expression.

logFC

the log fold change of the differential expression.

score

1 - pvalue.


csoneson/compcodeR documentation built on Oct. 25, 2023, 1:28 a.m.