getNegativeBinomialMean: Get NB mean

In csoneson/compcodeR: RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

Get NB mean

Description

Get the NB mean for one gene in one sample

Usage

getNegativeBinomialMean(
  i,
  j,
  S1,
  prob.S1,
  sum.S1,
  nfact_length.S1,
  S2,
  prob.S2,
  sum.S2,
  nfact_length.S2,
  seq.depths
)

Arguments

i	gene index.
j	sample index.
S1	Indices in condition 1.
prob.S1	Vector of means for condition 1.
sum.S1	Sum of means for condition 1.
nfact_length.S1	Matrix of length factors for condition 1.
S2	Indices in condition 2.
prob.S2	Vector of means for condition 2.
sum.S2	Sum of means for condition 2.
nfact_length.S2	Matrix of length factors for condition 2.

Value

The mean for gene i in sample j.

csoneson/compcodeR documentation built on Oct. 25, 2023, 1:28 a.m.