Man pages for cstubben/genomes2
Genome sequencing project metadata
| doublingTime | Doubling time for genome projects |
| efetch | Entrez database downloads |
| einfo | Entrez database information |
| elink | Entrez database links |
| esearch | Entrez database search |
| esummary | Entrez database summaries |
| euks | Eukaryotic genomes at NCBI |
| ftpList | List FTP files and directories |
| genomes | Introduction to the genomes package |
| genomes-internal | Internal genomes Functions |
| genomes-lines | Add lines to a genomes plot |
| genomes-plot | Genome table plots by release date |
| genomes-print | Print genome tables |
| genomes-summary | Genome table summaries |
| genomes-update | Genome table updates |
| genus | Extract the genus name |
| image2 | Display a matrix image |
| like | Pattern matching using wildcards |
| ncbiGenome | NCBI Genome links to the Nucleotide database |
| ncbiNucleotide | NCBI Nucleotide database |
| ncbiProject | NCBI BioProject database |
| ncbiPubmed | NCBI PubMed database |
| ncbiRelease | NCBI revision history |
| ncbiSubmit | NCBI submission dates |
| ncbiTaxonomy | NCBI taxonomy database |
| plotby | Plot groups of genomes by release date |
| proks | Prokaryotic genomes at NCBI |
| read.genemark | Read a GeneMark output file |
| read.gff | Read a GFF file from NCBI |
| read.glimmer | Read a Glimmer output file |
| read.ncbi.ftp | Read files from the NCBI genomes FTP |
| read.prodigal | Read a Prodigal gene finding output file |
| read.ptt | Read a NCBI protein or RNA feature table |
| species | Extract the species name |
| table2 | Format and sort a contigency table |
| virus | Virus genomes at NCBI |
| year | Parse a date string |
