Description Usage Arguments Details Value Author(s) Examples
Returns the date a sequence was first seen at NCBI using the revision history display.
1 | ncbiRelease(ids, db="nuccore", common=TRUE, random=20)
|
ids |
A vector or comma-separated list of sequence accessions or GI numbers |
db |
Entrez sequence database to search, default nuccore |
common |
If replaced sequences are found, search for the earliest date in the common revision history |
random |
The number of replaced sequences to search |
Searches the revision history display and parses the line
listing the date a sequence was first seen at NCBI.
In some cases, a sequence replaces earlier IDs and if the common
option is TRUE,
the earliest date of the replaced sequences is returned instead. Also, since a sequence accession
may replace 500 or more ids, a random sample of the replaced sequences will be checked.
A data frame listing the accession, release date, and whether replaced sequences are found
Chris Stubben
1 2 3 4 5 6 7 8 9 | ## Not run:
#Yersinia pestis - 1 chromosome and 3 plasmids
ncbiRelease("AL590842,AL117189,AL109969,AL117211")
# or skip common revision history
ncbiRelease("AL590842", common=FALSE)
## End(Not run)
# Protein acc
ncbiRelease("CAA21395", db="protein")
|
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