read.genemark: Read a GeneMark output file
In cstubben/genomes2: Genome sequencing project metadata
Description
Usage
Arguments
Details
Value
Note
Author(s)
References
See Also
Examples
Description
Read a GeneMark HMM version 2.6 file from NCBI (version 3)
Usage
1
Arguments
file
GeneMark HMM file
Details
GeneMark HMM files are available from the NCBI genomes ftp
directory, ftp://ftp.ncbi.nih.gov/genomes.
Value
GRanges with 2 elementMetadata columns: id and class.
Note
Two GeneMark predictions are available from teh NCBI genomes ftp. This function
currently reads the HMM version 2.6 files only
Author(s)
Chris Stubben
References
see http://exon.gatech.edu for details about GeneMark
See Also
Examples
1
2
3
4
file <- "ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.GeneMarkHMM-2.6r"
x <-read.genemark(file)
x
metadata(x)
cstubben/genomes2 documentation built on May 14, 2019, 12:25 p.m.
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Description Usage Arguments Details Value Note Author(s) References See Also Examples
Description
Read a GeneMark HMM version 2.6 file from NCBI (version 3)
Usage
1 |
Arguments
file |
GeneMark HMM file |
Details
GeneMark HMM files are available from the NCBI genomes ftp directory, ftp://ftp.ncbi.nih.gov/genomes.
Value
GRanges with 2 elementMetadata columns: id and class.
Note
Two GeneMark predictions are available from teh NCBI genomes ftp. This function currently reads the HMM version 2.6 files only
Author(s)
Chris Stubben
References
see http://exon.gatech.edu for details about GeneMark
See Also
Examples
1 2 3 4 | file <- "ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.GeneMarkHMM-2.6r"
x <-read.genemark(file)
x
metadata(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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