ncbiProject: NCBI BioProject database

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/ncbiProject.R

Description

Search the Entrez BioProject (Genome Project) at NCBI and retrieve a project summary table

Usage

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ncbiProject(term, refseq = FALSE)

Arguments

term

any valid combination of Entrez search terms

refseq

include RefSeq and Overview projects, if false then only primary submissions excluding RefSeq.

Details

Searches the new BioProject database using the ESearch utility

Value

A genomes data frame with 32 summary fields columns

Author(s)

Chris Stubben

References

A description of the Entrez programming utilities is at http://eutils.ncbi.nlm.nih.gov/.

See Also

ncbiGenome

Examples

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## Not run: 
x <- ncbiProject("Yersinia[ORGN]")
x
summary(x)

#Metagenomes  
metag <- ncbiProject("metagenome[Project Data Type]")
metag2 <- ncbiProject("metagenomes[Orgn]")

## End(Not run)

cstubben/genomes2 documentation built on May 12, 2017, 1:19 p.m.