read.glimmer: Read a Glimmer output file
In cstubben/genomes2: Genome sequencing project metadata
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Read a Glimmer3 gene output file from NCBI
Usage
1
Arguments
file
Glimmer3 file
Details
Glimmer files are available from the NCBI genomes ftp
directory, ftp://ftp.ncbi.nih.gov/genomes.
Value
GRanges with 3 elementMetadata columns: id, frame and score
Author(s)
Chris Stubben
References
Details about Glimmer3 are available at http://www.cbcb.umd.edu/software/glimmer
See Also
Examples
1
2
3
4
5
file<-"ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.Glimmer3"
x <-read.glimmer(file)
x
metadata(x)
table(values(x)$frame)
cstubben/genomes2 documentation built on May 14, 2019, 12:25 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Read a Glimmer3 gene output file from NCBI
Usage
1 |
Arguments
file |
Glimmer3 file |
Details
Glimmer files are available from the NCBI genomes ftp directory, ftp://ftp.ncbi.nih.gov/genomes.
Value
GRanges with 3 elementMetadata columns: id, frame and score
Author(s)
Chris Stubben
References
Details about Glimmer3 are available at http://www.cbcb.umd.edu/software/glimmer
See Also
Examples
1 2 3 4 5 | file<-"ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.Glimmer3"
x <-read.glimmer(file)
x
metadata(x)
table(values(x)$frame)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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